PBSTAT-CL 2.2.1
Data file (Excel .xlsx)
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Analysis
Grouping
Selection (MVSI)
Selection proportion (%)
Dissimilarity method
Gower
Euclidean
Manhattan
Standarized
Clustering method
Average linkage
Single linkage
Complete linkage
Ward
Weighted average
Generalized average
Divisive
Neighbor-joining
Partitioning around medoids
Fuzzy
Heatmap (no clustering)
Dendrogram type
Rectangle
Triangle
Circlized
Fan
Unrooted
Radial
Banner
Horizontal
Number of clusters (k)
Color
RainbowHCL
Black
Tol
Accent
Dark2
Paired
Pastel1
Pastel2
Set1
Set2
Set3
Gray background
Plot width (px)
Plot height (px)
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Citation
Suwarno, W. B., Sobir, & Sitaresmi, T. (2025).
PBSTAT-CL: Cluster analysis for plant genetic diversity studies
(Version 2.2.1) [Computer software]. IPB University. http://www.pbstat.com
Message
Silhouette plot
Average silhouette width vs. number of clusters
Cluster membership
Agglomerative and divisive coefficients
Correlations among dissimilarity and cophenetic distances
Principal coordinate analysis (PCoA)
Force-directed graph
MVSI plot
Heatmap of genotypes and traits
Plot of selection differential
Plot of selection differential (%)
MVSI and traits
Selection differential for quantitative traits